An open-source framework for large-scale, flexible evaluation of biomedical text mining systems

doi:10.1186/1747-5333-3-1

Journal of Biomedical Discovery and Collaboration

Volume 3

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An open-source framework for large-scale, flexible evaluation of biomedical text mining systems

William A Baumgartner Jr, K Bretonnel Cohen and Lawrence Hunter

Center for Computational Pharmacology, University of Colorado School of Medicine, Aurora, CO, USA

Journal of Biomedical Discovery and Collaboration 2008, 3:1doi:10.1186/1747-5333-3-1


Published:	29 January 2008

Additional files

Additional file 1:

Evaluation platform source code. The additional file contains the software evaluation framework discussed in this paper. The most current release can be downloaded from SourceForge.net [1]. See the accompanying README file for instructions on installation and use. Also included in the distribution is a collection of UIMA wrappers for some commonly used BioNLP tools and annotated corpora.

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