Table 7

Annotation hierarchy subtask, sorted by F-score.

Run
Group (reference)
Precision
Recall
F-score

lgcad1
indiana.u.seki [7]
0.4415
0.7697
0.5611
lgcad2
indiana.u.seki [7]
0.4275
0.7859
0.5537
wiscWRT
u.wisconsin [8]
0.4386
0.6202
0.5138
wiscWT
u.wisconsin [8]
0.4218
0.6263
0.5041
dimacsAg3mh
rutgers.dayanik [3]
0.5344
0.4545
0.4913
NLMA1
nlm.umd.ul [12]
0.4306
0.5515
0.4836
wiscWR
u.wisconsin [8]
0.4255
0.5596
0.4834
NLMA2
nlm.umd.ul [12]
0.427
0.5374
0.4758
wiscW
u.wisconsin [8]
0.3935
0.5596
0.4621
KoikeyaHi1
u.tokyo (none)
0.3178
0.7293
0.4427
iowarun3
u.iowa [22]
0.3207
0.6
0.418
iowarun1
u.iowa [22]
0.3371
0.5434
0.4161
iowarun2
u.iowa [22]
0.3812
0.4505
0.413
BIOTEXT22
u.cberkeley.hearst [16]
0.2708
0.796
0.4041
BIOTEXT21
u.cberkeley.hearst [16]
0.2658
0.8141
0.4008
dimacsAl3w
rutgers.dayanik [3]
0.5015
0.3273
0.3961
GUCsvm0
german.u.cairo [11]
0.2372
0.7414
0.3595
GUCir50
german.u.cairo [11]
0.2303
0.8081
0.3584
geneteamA5
u.hospital.geneva [18]
0.2274
0.7859
0.3527
GUCir30
german.u.cairo [11]
0.2212
0.8404
0.3502
geneteamA4
u.hospital.geneva [18]
0.209
0.9354
0.3417
BIOTEXT24
u.cberkeley.hearst [16]
0.4452
0.2707
0.3367
GUCsvm5
german.u.cairo [11]
0.2052
0.9354
0.3366
cuhkrun3
chinese.u.hongkong (none)
0.4174
0.2808
0.3357
geneteamA2
u.hospital.geneva [18]
0.2025
0.9535
0.334
dimacsAabsw1
rutgers.dayanik [3]
0.5979
0.2283
0.3304
BIOTEXT23
u.cberkeley.hearst [16]
0.4437
0.2626
0.3299
geneteamA1
u.hospital.geneva [18]
0.1948
0.9778
0.3248
geneteamA3
u.hospital.geneva [18]
0.1938
0.9798
0.3235
GUCbase
german.u.cairo [11]
0.1881
1
0.3167
BIOTEXT25
u.cberkeley.hearst [16]
0.4181
0.2525
0.3149
cuhkrun2
chinese.u.hongkong (none)
0.4385
0.2303
0.302
cuhkrun1
chinese.u.hongkong (none)
0.4431
0.2283
0.3013
dimacsAp5w5
rutgers.dayanik [3]
0.5424
0.1939
0.2857
dimacsAw20w5
rutgers.dayanik [3]
0.6014
0.1677
0.2622
iowarun4
u.iowa [22]
0.1692
0.1333
0.1492
Mean

0.3600
0.5814
0.3824

Cohen and Hersh Journal of Biomedical Discovery and Collaboration 2006 1:4   doi:10.1186/1747-5333-1-4